bokeh.palettes.vbar_stack

    def SummaryBarChart(self):
        self.summaryData.sort_values(by=['Total'], inplace=True)
        self.summaryData.reset_index(drop=True, inplace=True)

        # Get factors for each Sample
        factors = []
        shared = []
        clonal = []
        subclonal = []
        self.summaryData.rename(index=self.summaryData.Sample, inplace=True)
        for sam in self.summaryData.Sample:
            factors.append( (sam,"Total") )
            clonal.append(self.summaryData.loc[sam,'Clonal'])
            subclonal.append(self.summaryData.loc[sam,'Subclonal'])
            shared.append(self.summaryData.loc[sam,'Shared'])

            factors.append( (sam,"WB") )
            clonal.append(self.summaryData.loc[sam,'Clonal_WB'])
            subclonal.append(self.summaryData.loc[sam,'Subclonal_WB'])
            shared.append(self.summaryData.loc[sam,'Shared_WB'])

            factors.append( (sam,"SB") )
            clonal.append(self.summaryData.loc[sam,'Clonal_SB'])
            subclonal.append(self.summaryData.loc[sam,'Subclonal_SB'])
            shared.append(self.summaryData.loc[sam,'Shared_SB'])

        clonality = ['clonal','subclonal','shared']

        source = ColumnDataSource(data=dict(
            x=factors,
            clonal=clonal,
            subclonal=subclonal,
            shared=shared
        ))

        TOOLTIPS = [('Clonal', '@clonal'), ('Subclonal', '@subclonal'), ('Shared', '@shared')]

        p = figure(x_range=FactorRange(*factors), tooltips=TOOLTIPS, height=400)
        clonalityColors = ["#00a4ed","#ef4f25","#ede614"]
        p.vbar_stack(clonality, x='x',width=0.9,color=clonalityColors, source=source, legend=[value(x) for x in clonality])
        p.xaxis.major_label_orientation = np.pi / 2
        p.xaxis.group_label_orientation = np.pi / 2
        p.legend.orientation = "horizontal"
        p.legend.location = "top_center"
        p.xgrid.grid_line_color = None
        p.ygrid.grid_line_color = None
        p.xaxis.major_tick_line_color = None
        p.yaxis.axis_label="Neoantigens"
        p.x_range.range_padding = 0.1
        return(p)

    def ChordDiagram(self):